FelMGDB
This project (FelMGDB: Feline Metagenomic Genome Database) has developed a comprehensive database of feline gut microbiota, integrating reference genomes and metagenomic sequencing data. Derived from 412 cat gut metagenomic samples, totaling approximately 3,693 GB and spanning regions such as China, the United States, and the United Kingdom, the database represents over ten common feline breeds. It includes 514 species and 2,852 non-redundant, medium-to-high-quality genomes (completeness >70%, contamination <5%), with 1,443 high-quality reference genomes (completeness >90%, contamination <5%). The platform also provides metagenomic expression profiles of microbial taxa across the 412 samples, offering insights into microbial abundance in the feline gut.
Data Statistics
Highlights essential metrics and insights into the database's structure.
514
Species
2852
Genomes
412
Samples
6,043,781
Genes
| Study | Sample Number | Breed | Gender | Health status | City | Sequencing platform | Data volume |
|---|---|---|---|---|---|---|---|
| This study | 234 | British Shorthair / American Shorthair et al. | Male/Female | Normal | Guangzhou/Yunfu/Changchun et al. | NovaSeq 6000 | 2694.20 GB |
| ENA (PRJEB4391) | 36 | domestic cat | Unknown | na | Urbana | HiSeq2000 | 31.54 GB |
| ENA (PRJEB9357) | 88 | domestic cat | Male/Female | na | London | HiSeq2000 | 429.07 GB |
| NCBI (PRJNA758898) | 16 | domestic cat | Male | Obese/Normal | Auburn | NovaSeq 6000 | 271.74 GB |
| NCBI (PRJNA908260) | 8 | British Shorthair | Male/Female | diarrhea/Normal | Tianjin | NovaSeq 6000 | 53.90 GB |
| NCBI (PRJNA944553) | 30 | British Shorthair / Rogdall et al. | Male/Female | Normal | Guangzhou | NovaSeq 6000 | 212.54 GB |
Recent News & Blogs
15
MAR
Enterotype Analysis Pipeline: Development and Implementation
1. MAGs Generation Workflow2. Taxonomic Relative Abundance Estimation via Kraken2 and Bracken3. Enterotyping Analysis PipelineGut Enterotyping......
15
MAR
Taxonomic Relative Abundance Estimation via Kraken2 and Bracken
1. MAGs Generation Workflow2. Taxonomic Relative Abundance Estimation via Kraken2 and Bracken3. Enterotyping Analysis Pipeline1. Build a Custom......
06
MAR
Download Resources of FelMGDB
This project provides comprehensive access to all its resources through dedicated download services, ensuring convenience and utility for......
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